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I have tried several different flash carts, and several different ROMs, but for some reason Gold and Silver share a sav file instead of creating their own save file. I have seen this behavior over several versions of goomba.
How do you get Gold and Silver to create there own save file?
Some of the flash cart have there own built in goomba and just need the clean ROM, others need the goomba front to built the rom set.
I have the following carts:
NEO2
XG2Turbo
Supercard Mini SD
EZ Flash IV
I have also seen this on the R4 carts for the DS.